Protein Docking Server

Protein-protein interaction is known to determine biological activity. Protein Docking Server is an internet service that calculates the binding affinities and complex geometries of interacting proteins at an atomic level.
In order to decrease calculation time, a shape matching algorithm is utilized based on Escher protein docking algorithm. Based on the shape matching results, calculations at an atomic level is carried out using Autodock 4.0.
The process is completely automated, thus, the user can upload the PDB coordinates of the query proteins, and then the complex geometry and binding affintiy are presented.
The architecture of the Protein Docking Server is similar to our other product, Docking Server, which calculates protein-ligand interaction.